Molecular determinants for the complex binding specificity of the PDZ domain in PICK1
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Molecular determinants for the complex binding specificity of the PDZ domain in PICK1. / Madsen, Kenneth L; Beuming, Thijs; Niv, Masha Y; Chang, Chiun-Wen; Dev, Kumlesh K; Weinstein, Harel; Gether, Ulrik.
In: Journal of Biological Chemistry, Vol. 280, No. 21, 2005, p. 20539-48.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Molecular determinants for the complex binding specificity of the PDZ domain in PICK1
AU - Madsen, Kenneth L
AU - Beuming, Thijs
AU - Niv, Masha Y
AU - Chang, Chiun-Wen
AU - Dev, Kumlesh K
AU - Weinstein, Harel
AU - Gether, Ulrik
N1 - Keywords: Animals; Binding Sites; Carrier Proteins; Computer Simulation; Dopamine Plasma Membrane Transport Proteins; Fluorescence Polarization; Glutathione Transferase; Humans; Lysine; Membrane Glycoproteins; Membrane Transport Proteins; Models, Molecular; Mutagenesis; Nerve Tissue Proteins; Nuclear Proteins; Protein Binding; Protein Kinase C; Protein Kinase C-alpha; Rats; Receptors, Adrenergic, beta-2; Recombinant Fusion Proteins; Structure-Activity Relationship
PY - 2005
Y1 - 2005
N2 - PICK1 (protein interacting with C kinase 1) contains a single PDZ domain known to mediate interaction with the C termini of several receptors, transporters, ion channels, and kinases. In contrast to most PDZ domains, the PICK1 PDZ domain interacts with binding sequences classifiable as type I (terminating in (S/T)XPhi; X, any residue) as well as type II (PhiXPhi; Phi, any hydrophobic residue). To enable direct assessment of the affinity of the PICK1 PDZ domain for its binding partners we developed a purification scheme for PICK1 and a novel quantitative binding assay based on fluorescence polarization. Our results showed that the PICK1 PDZ domain binds the type II sequence presented by the human dopamine transporter (-WLKV) with an almost 15-fold and >100-fold higher affinity than the type I sequences presented by protein kinase Calpha (-QSAV) and the beta(2)-adrenergic receptor (-DSLL), respectively. Mutational analysis of Lys(83) in the alphaB1 position of the PDZ domain suggested that this residue mimics the function of hydrophobic residues present in this position in regular type II PDZ domains. The PICK1 PDZ domain was moreover found to prefer small hydrophobic residues in the C-terminal P(0) position of the ligand. Molecular modeling predicted a rank order of (Val > Ile > Leu) that was verified experimentally with up to a approximately 16-fold difference in binding affinity between a valine and a leucine in P(0). The results define the structural basis for the unusual binding pattern of the PICK1 PDZ domain by substantiating the critical role of the alphaB1 position (Lys(83)) and of discrete side chain differences in position P(0) of the ligands.
AB - PICK1 (protein interacting with C kinase 1) contains a single PDZ domain known to mediate interaction with the C termini of several receptors, transporters, ion channels, and kinases. In contrast to most PDZ domains, the PICK1 PDZ domain interacts with binding sequences classifiable as type I (terminating in (S/T)XPhi; X, any residue) as well as type II (PhiXPhi; Phi, any hydrophobic residue). To enable direct assessment of the affinity of the PICK1 PDZ domain for its binding partners we developed a purification scheme for PICK1 and a novel quantitative binding assay based on fluorescence polarization. Our results showed that the PICK1 PDZ domain binds the type II sequence presented by the human dopamine transporter (-WLKV) with an almost 15-fold and >100-fold higher affinity than the type I sequences presented by protein kinase Calpha (-QSAV) and the beta(2)-adrenergic receptor (-DSLL), respectively. Mutational analysis of Lys(83) in the alphaB1 position of the PDZ domain suggested that this residue mimics the function of hydrophobic residues present in this position in regular type II PDZ domains. The PICK1 PDZ domain was moreover found to prefer small hydrophobic residues in the C-terminal P(0) position of the ligand. Molecular modeling predicted a rank order of (Val > Ile > Leu) that was verified experimentally with up to a approximately 16-fold difference in binding affinity between a valine and a leucine in P(0). The results define the structural basis for the unusual binding pattern of the PICK1 PDZ domain by substantiating the critical role of the alphaB1 position (Lys(83)) and of discrete side chain differences in position P(0) of the ligands.
U2 - 10.1074/jbc.M500577200
DO - 10.1074/jbc.M500577200
M3 - Journal article
C2 - 15774468
VL - 280
SP - 20539
EP - 20548
JO - Journal of Biological Chemistry
JF - Journal of Biological Chemistry
SN - 0021-9258
IS - 21
ER -
ID: 21594033